Callable cancer loci - test

The coverage report is generated with cacao version 1.0.0, using the following key settings:

• Genome assembly: grch37
• Mode: Hereditary cancer AND actionable somatic loci AND somatic hotspots
• Alignment quality threshold (MAPQ): 0
• Callability levels (somatic):
  • NO_COVERAGE: No coverage (zero sequencing depth)
  • LOW_COVERAGE: Sequencing depth from 1 to 29
  • CALLABLE: Sequencing depth from 30 to 199
  • HIGH_COVERAGE: Sequencing depth above 200
• Callability levels (germline):
  • NO_COVERAGE: No coverage (zero sequencing depth)
  • LOW_COVERAGE: Sequencing depth from 1 to 9
  • CALLABLE: Sequencing depth from 10 to 99
  • HIGH_COVERAGE: Sequencing depth above 100